1 3 Crystal Structure Analysis 1. Bragg Equation 2. Single Crystal Diffraction 3. X-ray Powder Diffraction Crystal Structure Analysis X-ray diffraction Electron Diffraction Neutron Diffraction Essence of diffraction: Bragg Diffraction Intensity Bragg AngleUnit Cell Crystal (Crystallite) X?ray Powder Pattern Electron Diffraction Powder Pattern Crystals, Powders, and Diffraction 0 Polycrystalline Specimen X-ray Diffraction ? When an X-ray beam bombards a crystal, the atomic structure of the crystal causes the beam to scatter in a specific pattern. This phenomenon, known as X-ray diffraction, occurs when the wavelength of the X rays and the distances between atoms in the crystal are of similar magnitude. X-ray Diffraction Laue Equations crystal ? periodic repetition of identical unit cells ? diffraction grid ? constructive interference of scattered waves only in particular directions: von Laue Diffraction λ=α?α h)cos(cosa 0 2 von Laue Diffraction § For different incidence directions, the diffraction patterns are different λ=γ?γ λ=β?β λ=α?α l)cos(cosc k)cos(cosb h)cos(cosa 0 0 0 Laue Diffraction Single crystal Laue′s Experiments Laue Images of Zincblende ZnS (a)show its four-fold axis, (b)show its three-fold axis Einstein regards this experiment as the most beautiful one in physics. Nobel Prize winner of 1914 the Bragg Condition of Crystal Diffraction d q l Strong reflection of the incident wave will occur for the set of incident angles that satisfy the Bragg condition: 2dsinθ =nλ the index n defines the path difference between waves i & ii when the diffraction occurs … for a given value of n this path difference is nλ. Geometry of Bragg Diffraction Path difference for diffraction of rays from adjacent planes is 2dhklsinθ, which must correspond to nλ for constructive interference. q q dhklsinqdhklsinq q q θ=λ sind2n hkl Bragg's Law When x-rays are scattered from a crystal lattice, peaks of scattered intensity are observed which correspond to the following conditions: The angle of incidence = angle of scattering The pathlength difference is equal to an integer number of wavelengths. The conditions for maximum intensity contained in Bragg's law above allow us to calculate details about the crystal structure, or if the crystal structure is known, to determine the wavelength of the x-rays incident upon the crystal. 3 nλ = 2dsinθ where n ? order of diffraction λ ? X-ray wavelength d ? spacing between layers of atom θ ? angle of diffraction Bragg's Law is the fundamental law of x-ray crystallography. Bragg's Law The Braggs British physicists William Henry Bragg (1862~1942) and William Lawrence Bragg (1890~1971) won Nobel Physical Prize in 1915 due to their achievements on the Structure Analysis via X-ray. Generation of X-rays Copper anode Heated tungsten filament electrons X-rays - + cathode anode PD ? 50 kV §electrons are produced by thermionic emission from a W filament and are accelerated by a large potential difference §the high energy electrons (? 50 keV) bombard a metal target (usually Cu, but can also be Mo) §X-rays are generated by the interaction between electrons and target X-ray Emission Spectrum §upon collisions the high energy electrons can knock inner core electrons from the target atoms, leaving vacancies in the innermost shell (K)§ these vacancies are rapidly filled by electronic transitions from the other orbitals not all transitions are possible the wavelengths are characteristic of the target element Intensity Wavelengthlc Kβ2 Kβ1 Kα1 Kα2 Copper anode: Kα 1.5418 ? Kβ 1.3922 ? K M L Kβ2Kβ1Kα1Kα2 X-ray Generation Using a Synchrotron High intensity X-rays can be generated using a particle accelerator such as a synchrotron: charged particles (electron or positrons) are accelerated round a circle and emit radiation tangentially. A particular wavelength can be selected from the continuous spectrum of X-rays generated. Synchrotron radiation: §tunable §intense X-rays X-rays beam Synchrotron Radiation More intense X-rays at shorter wavelengths mean higher resolution & much quicker data collection. 4 X-ray Generators ? The Synchrotron European Synchrotron Radiation Facility Grenoble, France Electrons (or positrons) are released from a particle accelerator into a storage ring. The trajectory of the particles is determined by their energy and the local magnetic field. Magnets of various types are used to manipulate the particle trajectory. When the particle beam is “bent”by the magnets, the electrons (or positrons) are accelerated toward the center of the ring. Charged particles moving under the influence of an accelerating field emit electromagnetic radiation, and when they are moving at close to relativistic speeds, the radiation emitted includes high energy x- ray radiation.. Schematic Illustration of an X-ray Diffractometer X-RAY SOURCE CRYSTAL DETECTOR PATH OF DETECTOR An experimental arrangement for using Bragg diffraction to determine the structure of single-crystal samples is illustrated schematically left Since it is usually difficult to move the X-ray source the sample itself is rotated with respect to the source and when the sample is moved through an angle θ the detector is moved through an angle 2θ. The wavelength of the x-ray source is well known so by measuring the angles at which strong diffraction peaks (i.e. strong detector signal) occur the spacing of particular planes can be determined. Type Tube Specimen Receiving Slit r1 r2 Brag -Brentano q:2q Fixed Varies as q Varies as 2q Fixed =r1 Brag -Brentano q:q Varies as q Fixed Varies as q Fixed =r1 Seeman -Bohlin Fixed Fixed Varies as 2q Fixed variabl e Texture Sensitive (Ladel) Fixed Varies as q processes about a Varies as 2q Fixed variabl e * Generally fixed, but can rotate about a or rock about goniometer axis. Common Mechanical Movement in Powder Diffractometers Schematic Illustration of X-ray Diffraction To obtain nearly monochromatic x-rays, an x-ray tube is used to produce characteristic x-rays. Matched filters are used in the x-ray beam to optimize the fraction of the energy which is in the Kα line. θ-2θ geometry The Bragg-Brentano diffractometer is the dominant geometry found in most laboratories. In this system, if the tube is fixed, this is called θ-2θ geometry. If the tube moves (and the specimen is fixed), this is called θ : θ geometry. The essential characteristics are: (1) The relationship between θ (the angle between the specimen surface and the incident x-ray beam) and 2θ (the angle between the incident beam and the receiving slit detector) is maintained throughout the analysis. (2) r1 and r2 are fixed and equal and define a diffractometer circle in which the specimen is always at the center. Radiation Method White Laue: stationary single crystal Monochromatic Powder: specimen is polycrystalline, and therefore all orientations are simultaneously presented to the beam Rotation, Weissenberg: oscillation De Jong-Bouman: single crystal rota tes or oscillates about chosen axis in path of beam Precession: chosen axis of single crystal precesses about beam direction 5 § Diffraction can occur whenever Bragg's law is satisfied. With monochromatic radiation, an arbitrary setting of a single crystal in an x-ray beam will not generally produce any diffracted beams. There would therefore be very little information in a single crystal diffraction pattern from using monochromatic radiation. § This problem can be overcome by continuously varying λ or θ over a range of values, to satisfy Bragg's law. Practically this is done by: (1)using a range of x-ray wavelengths (i.e. white radiation), or (2)by rotating the crystal or, using a powder or polycrystalline specimen. XRD: “Rocking”Curve Scan Vary orientation of ?k relative to sample normal while maintaining its magnitude. How? “Rock”sample over a very small angular range. Resulting data of Intensity vs. theta (θ, sample angle) shows detailed structure of diffraction peak being investigated. ik fk k? “Rock”Sample k? Sample normal XRD: Rocking Curve Example Rocking curve of single crystal GaN around (002) diffraction peak showing its detailed structure. 16.995 17.195 17.395 17.595 17.795 0 8000 16000 GaN Thin Film (002) Reflection Intensity (Counts/s) theta (deg) Rocking Curves assessing crystal quality To estimate the crystal quality a crystal is rotated through θ with the counter set at a known Bragg angle, 2θ. The resulting intensity versus θ curve is known as a rocking curve. The width of the rocking curve is a direct measure of the range of orientation on mosaic spread present in the irradiated area of the crystal, as each sub grain of the crystal will come into orientation as the crystal is rotated. For a film that isn't truely epitaxial, the width of a rocking curve of the layer peak will be a measurement of the quality of the layer. Rotating Crystal Method In the rotating crystal method, a single crystal is mounted with an axis normal to a monochromatic x- ray beam. A cylindrical film is placed around it and the crystal is rotated about the chosen axis. As the crystal rotates, sets of lattice planes will at some point make the correct Bragg angle for the monochromatic incident beam, and at that point a diffracted beam will be formed. The reflected beams are located on the surface of imaginary cones. When the film is laid out flat, the diffraction spots lie on horizontal lines. Laue Method § The Laue method is mainly used to determine the orientation of large single crystals. White radiation is reflected from, or transmitted through, a fixed crystal. § The diffracted beams form arrays of spots, that lie on curves on the film. The Bragg angle is fixed for every set of planes in the crystal. Each set of planes picks out and diffracts the particular wavelength from the white radiation that satisfies the Bragg law for the values of d and θ involved. Each curve therefore corresponds to a different wavelength. The spots lying on any one curve are reflections from planes belonging to one zone. Laue reflections from planes of the same zone all lie on the surface of an imaginary cone whose axis is the zone axis. § Experimental § There are two practical variants of the Laue method, the back-reflection and the transmission Laue method. 6 Back-reflection Laue Methods § In the back-reflection method, the film is placed between the x-ray source and the crystal. The beams which are diffracted in a backward direction are recorded. § One side of the cone of Laue reflections is defined by the transmitted beam. The film intersects the cone, with the diffraction spots generally lying on an hyperbola. Transmission Laue Methods § In the transmission Laue method, the film is placed behind the crystal to record beams which are transmitted through the crystal. § One side of the cone of Laue reflections is defined by the transmitted beam. The film intersects the cone, with the diffraction spots generally lying on an ellipse. Stoe IPDS Image Plate Diffraction System single crystal size < 0.5 mm Chemical Crystallography?? Single Crystal Analysis Single Crystal X-ray Diffraction Single crystal x-ray diffraction is a kind of method by put a crystal in the beam, observing what reflections come out at what angles for what orientations of the crystal with what intensities. §Advantage: You can learn everything to know about the structure. §Disadvantages: You however may not have a single crystal. It is time-consuming and difficult to orient the crystal. If more than one phase is present, you will not necessarily realize that there is more than one set of reflections. Single Crystal X-ray Diffraction (Cont.) § Primary application is to determine atomic structure (symmetry, unit cell dimensions, space group, etc.,). § Older methods used a stationary crystal with "white x-ray" beam (x-rays of variableλ) such that Bragg's equation would be satisfied by numerous atomic planes. § Modern methods (rotation, Weissenberg, precession, 4-circle) utilize various combination of rotating-crystal and camera setup to overcome limitations of the stationary methods X-rays Diffraction For perfect crystals, I(2 θ) consists of delta functions (perfectly sharp scattering). For imperfect crystals, the peaks are broadened. For liquids and glasses, it is a continuous, slowly varying function. X-ray diffraction works on the principle that x-rays form predictable diffraction patterns when interacting with a crystalline matrix of atoms. 7 STADI-P Stoe Powder diffractometer powder sample in glass capillary Chemical Crystallography ?? Powder Analysis powder Powder X-ray Diffraction Measuring samples consisting of a collection of many small crystallites with random orientations. Powder XRD is used routinely to assess the purity and crystallinity of materials Each crystalline phase has a unique powder diffraction pattern Measured powder patterns can be compared to a database for identification §Advantages over Single Crystal Diffraction It is usually much easier to prepare a powder sample. You are guaranteed to see all reflections. Information from Powder XRD Phase purity –both qualitative and quantitative Crystallinity –amorphous content, particle size and strain Unit cell size and shape –from peak positions 20 30 40 50 60 70 800 10000 20000 30000 40000 50000 20 30 40 50 60 70 800 50 100 150 200 20 30 40 50 60 70 80200 400 600 800 1000 1200 1400 1600 1800 2000 Amorphous Polycrystalline Crystalline The Debye- Sherrer Camera 8 The Debye-Sherrer Camera L2180R4 =pi??θ pi?=θ 180R4 L2 θ is diffraction angle, R is radii of camera, 2L is the distance of every pair of arcs in the image Debye Scherrer Camera § A very small amount of powdered material is sealed into a fine capillary tube made from glass that does not diffract x-rays. The specimen is placed in the Debye Scherrer camera and is accurately aligned to be in the center of the camera. X-rays enter the camera through a collimator. § The powder diffracts the x-rays in accordance with Braggs law to produce cones of diffracted beams. These cones intersect a strip of photographic film located in the cylindrical camera to produce a characteristic set of arcs on the film. Debye-Scherrer Camera Can record sections on these cones on film or some other x-ray detector –Simplest way of doing this is to surround a capillary sample with a strip of film –Can covert line positions on film to angles and intensities by electronically scanning film or measuring positions using a ruler and guessing the relative intensities using a “by eye”comparison 1916 X-ray powders diffraction Powder Diffraction Film § When the film is removed from the camera, flattened and processed, it shows the diffraction lines and the holes for the incident and transmitted beams. § There are always two arcs in the x-ray beams Kα and Kβ, this causes the highest angle back-reflected arcs to be doubled. From noting this, it is always clear which hole is for the transmitted beam and which is for the incident beam in the film. Dutch post stamp, 1936, memorizing Peter Josephus Wilhelmus Debye and his Nobel prize. § The schematic shows the Debye cones that intersect the film in the camera, and how diffractions are measured on the film to determine the d-spacings for the reflections measured. Debye-Scherrer powder camera photographs of gold (Au), a Face centered cubic structure that exhibits a fairly simple diffraction Debye-Scherrer powder camera photographs of Zircon (ZrSiO4). Zircon is a fairly complex tetragonal structure and this complexity is reflected in the diffraction pattern. 9 Measurement of Debye-Scherrer Photographs Film from powder camera laid flat. The pattern of lines on a photograph (left figure) represents possible values of the Bragg angles which satisfy Bragg’s equation: hklhkl sind2n θ=λ Powder X-ray Diffraction (Powder diffraction film) The distance S1 corresponds to a diffraction angle of 2θ. The angle between the diffracted and the transmitted beams is always 2θ. We know that the distance between the holes in the film, W, corresponds to a diffraction angle of θ = pi . So we can find θ from: W2 S1pi=θ )WS1(2 2?pi=θor We know Bragg's Law: nλ = 2dsinθ and the equation for inter-planar spacing, d, for cubic crystals is given by: where a is the lattice parameter this gives: From the measurements of each arc we can now generate a table of S1, θ and sin2θ. 222hkl lkh ad ++ = )lkh(a4sin 22222 ++λ=θ Interpretation of Powder Photographs First task is to familiarize ourselves with these patterns. The three most common structures are called face-centered cubic (FCC), body-centered cubic (BCC) and hexagonal close- packed (HCP). Powder patterns of three common types of simple crystal structures. (a) Face-centered cubic (b) Body-centered cubic (c) Hexagonal close- packed Cubic Structures §For a cubic structure only one quantity is involved, the cell edge or the lattice parameter , we have Not all values of h2 + k2 + l2, which we shall call N, are possible. Numbers such as 7, 15, 23, 28, 60 are said to be forbidden. For small values of N, the values of h, k and l are easily deduced. )lkh(a4sin 22222 ++λ=θ Tetragonal and Hexagonal Structures § For tetragonal structures, we have For hexagonal structures, or trigonal structures referred to hexagonal axes )lcakh(a4sin 22 2 22 2hkl 2 ++λ=θ )lcakhkh(a4sin 22 2 22 2hkl 2 +++λ=θ 10 Indexing a diffraction pattern means assigning Miller indices hkl to each value of d If we know the unit cell, we can assign hkl values to each d value using: Similarly, if we know hkl values, we can calculate the unit cell However, often we don’t know hkl or the unit cell… . 2 2 2 2 2 2 2 c l b k a h d 1 ++= Indexing a Diffraction Pattern 2dsinθ = λ The split of the XRD lines: The symmetry of structure decreased, the lines increased. h k l h 2 + k 2 + l 2 h k l h2 + k2 + l 2 1 0 0 1 2 2 1, 3 0 0 9 1 1 0 2 3 1 0 10 1 1 1 3 3 1 1 11 2 0 0 4 2 2 2 12 2 1 0 5 3 2 0 13 2 1 1 6 3 2 1 14 2 2 0 8 4 0 0 16 In a cubic material, the largest d-spacing that can be observed is 100=010=001. For a primitive cell, we count according to h2+k2+l2 Note: 7 and 15 impossible Note: we start with the largest d-spacing and work down Note: not all lines are present in every case How Many Lines Are Possible? Observable diffraction peaks 222 lkh ++ Ratio Simple cubic SC: 1,2,3,4,5,6,8,9,10,11,12.. BCC: 2,4,6,8,10, 12… . FCC: 3,4,8,11,12,16,24…. 222hkl lkh ad ++ = λ=θ nsind2 Systematic Absences and Centering The presence of a centered lattice leads to the systematic absence of certain types of peak in the diffraction pattern For I centered lattices: h + k + l = 2n for a line to be present For an F centered lattice: h + k =2n, k + l = 2n and h + l = 2n For a C centered lattice: h + k =2n Ex: An element, BCC or FCC, shows diffraction peaks at 2θ: 40, 58, 73, 86.8,100.4 and 114.7. Determine:(a) Crystal structure? (b) Lattice constant? (c) What is the element? (222)60.709057.35114.7 (310)50.590350.2100.4 (220)40.472143.486.8 (211)30.353836.573 (200)20.2352958 (110)1 0.1172040 (hkl)theta2theta q2sin 222 lkh ++ a =3.18 ? , BCC, à W 11 Particle size The width of the peaks in a powder pattern contain information about the crystallite size in the sample (and also the presence of microstrain) Scherrer equation t ? mean size of crystallites K ? constant, roughly 1: depends on shape of crystallites B ? width of reflection in radian θ λ= cosB Kt Effect of Particle Size in X-ray Diffraction Scherrer Equation 2 θ → B 2 q2 2 q1 2 qB Smaller Crystallite Relative Intensity 2 θ→ B 2 q2 2 q1 2 qB Larger Crystallite Relative Intensity BcosB 9.0t θ λ= Bcost 9.0B θ λ= or Nanocrystal X-ray Diffraction Types of Diffraction Experiment X-ray -Routinely used to provide structural information on compounds and to identify samples -Used with both powder and single crystal samples -X-rays produced in the home lab or using synchrotrons -Can also be used to examine liquids and glasses Electron diffraction –primarily used for phase identification, and unit cell determination on small crystallites in the electron microscope -also used for gas phase samples Neutrons –useful source of structural information on crystalline materials, but expensive -Also useful for spectroscopy and structure of liquids/glasses -good for looking at light atoms –sensitive to magnetic moments HRTEM Image and ED Pattern of Tetrapod CdS Nanocrystals Low Energy Electron Diffraction (LEED) Provides information about surfaces This is a LEED pattern from a surface of Si. A bulk X-ray diffraction pattern would show only the strong spots on defining the hexagonal pattern. The additional fainter spots contain important information about the way in which Si atoms re-arrange themselves at the surface of Si, i.e. the surface has a slightly different structure from the bulk. These measurements are very important to device manufacturers, since the surface of silicon is used in so many technological applications. 12 4 Crystal Chemistry close packed structures octahedral and tetrahedral holes basic structures Inorganic Crystal Structures All crystal structures may be described in terms of the unit cell and atomic coordinates of the contents Many inorganic structures may be described as arrays of space filling polyhedra - tetrahedra, octahedra, etc. Many structures - ionic, metallic covalent - may be described as close packed structures. Close Packing Concept 2D close-packed layer ? Most efficient way to fill space Random arrangement of atoms (hard, neutral spheres) Close Packed Structures - Metals Most efficient way of packing equal sized spheres. In 2D, have close packed layers Coordination number (CN) = 6. This is the maximum possible for 2D packing. Can stack close packed (CP) to give 3D structures. Three Dimensional Packing The simplest arrangement is to place a second layer of spheres on top of the first layer. Two Main Stacking Sequences: If we start with one close packed layer, two possible ways of adding a second layer (can have one or other, but not a mixture) : 13 Two Main Stacking Sequences: If we start with one close packed layer, two possible ways of adding a second layer (can have one or other, but not a mixture) : Three-dimensional Packing of Spheres (Atoms) hexagonal close packing (HCP) cubic close packing (CCP) hexagonal close packing (HCP) (Be, Mg, Zn, Cd, Ti, Zr, Ru ...) cubic close packing (CCP or FCC) (Cu, Ag, Au, Al, Ni, Pd, Pt ...) Common Unit Cells for HCP and CCP Body centred cubic unit cell (BCC) and its lattice point representation fractional counting of atoms with respect to the content of a unit cell ! (Fe, Cr, Mo, W, Ta, Ba ...) A layer of atoms placed in the spaces between the first layer of atoms gives rise to the body-centered cubic unit cell. The first and third layer line up. Here 68% of the unit cell is filled and 32% is the spaces between spheres. Examples are iron, chromium, and all group 1A elements. No matter what type of packing, the coordination number of each equal size sphere is always 12 Packing Fraction The fraction of space which is occupied by atoms is called the “packing fraction”, η, for the structure. space available atoms by occupied space? = 74.023r216 r34 4? 3 3 =pi= pi ×= For cubic close packing: The spheres have been packed together as closely as possible, resulting in a packing fraction of 0.74. 14 Primitive Cubic Packing a = 2r a3 = 8r3 No. of atoms = (8 x 1/8) = 1 52.06r8 r34 3 3 =pi= pi =η Simple Cubic Packing Coordination number = 6 packing efficiency 52% 1. A layer of atoms placed directly over another layer of atoms will give rise to the simple cubic unit cell. Here 52% of the unit cell is filled with the atoms and 48% is the spaces between atoms. Two-Dimensional Packing § What is the most efficient way to arrange circles on a plane surface? Square packing coordination number = 4 Close packingcoordination number = 6 XY Y Y Y XY YY Y YY Metals usually have one of three structure types:FCC, HCP or body centered cubic (BCC). The reasons why a particular metal prefers a particular structure are still not well understood. FCC HCP ? BCC Unit Cell of Body-centered Close Packing Tungsten Body-centered packing Hexagonal Close Packing (HCP) Coordination number = 12 packing efficiency 74% 15 Cubic Close Packing (CCP) Close Packed Ionic Structures Ionic structures - cations (+ve) and anions (-ve) In many ionic structures, the anions, which are larger than the cations, form a close packed array and the cations occupy interstitial holes within this anion array. Two main types of interstitial site : Tetrahedral : CN = 4 Octahedral: CN = 6 Two Kinds of Interstitials Holes in Close Packing Structures Tetrahedral T+ Tetrahedral T?Octahedral O Two kinds of Holes Octahedral Hole Tetrahedral Hole C.N. = 3 C.N. = 4 C.N. = 6 cubic hole cuboctahedralhole 16 Fractional Coordinates Used to locate atoms within unit cell 1. 0, 0, 0 2. ?, ?, 0 3. ?, 0, ? 4. 0, ?, ? Note: atoms are in contact along face diagonals (close packed) Octahedral Sites Coordinate ?, ?, ? Distance = a/2 Coordinate 0, ?, 0 [=1, ?, 0 ] Distance = a/2 In a face centered cubic anion array, cation octahedral sites at: ? ? ?, ? 0 0, 0 ? 0, 0 0 ? Can divide the FCC unit cell into 8 ‘minicubes’ by bisecting each edge; in the center of each minicube is a tetrahedral site Location and Number of Octahedral Holes in a FCC (CCP) Unit Cell Z = 4 (number of atoms in the unit cell) N = 4 (number of octahedral holes in the unit cell) So 8 Tetrahedral Sites in a FCC 4 anions per unit cell at: 000, ??0, 0??, ?0? 4 octahedral sites at: ???, 00?, ?00, 0?0 4 tetrahedral T+ sites at: ??? , ???, ???,??? 4 tetrahedral T? sites at: ???, ???, ??? ??? A variety of different structures form by occupying T+ 、 T? and O sites to differing amounts: they can be empty, part full or full. Can also vary the anion stacking sequence - CCP or HCP Sizes of Interstitials FCC Spheres are in contact along face diagonals octahedral site, bond distance = a/2 radius of octahedral site = (a/2) ? r tetrahedral site, bond distance = a√3/4 radius of tetrahedral site = (a√3/4) ? r